# Calculate Ecological Information and Diatom Based Indices

## Documentation for package ‘diathor’ version 0.1.4

- DESCRIPTION file.

## Help Pages

cemfgs_rb | CEMFGS_RB
dbc_offline | DBC (offline)
des | DES
diaThor | DiaThor: A package to calculate multiple diatom-based biotic indices
diathor | DiaThor: A package to calculate multiple diatom-based biotic indices
diaThorAll | Runs all the DiaThor functions in a pipeline
diat_cemfgs_rb | Calculate the combined classification of ecological guilds and size classes for diatoms
diat_checkName | Searches all the taxa database for the input name
diat_des | Calculates the Descy Index (DES)
diat_disp | Calculates the Diatom Index for Soda Pans (DISP)
diat_diversity | Calculate diversity parameters for diatoms using the vegan package
diat_epid | Calculates the EPID index (EPID)
diat_getDiatBarcode | Loads the 'Diat.Barcode' database into DiaThor in the correct format
diat_guilds | Calculate ecological guilds for diatoms
diat_idap | Calculates the Indice Diatomique Artois-Picardie (IDAP)
diat_idch | Calculates the Swiss Diatom Index (IDCH)
diat_idp | Calculates the Pampean Diatom Index (IDP)
diat_ilm | Calculates the ILM Index (ILM)
diat_ips | Calculates the Specific Polluosensitivity Index (IPS) index
diat_loadData | Loads the Data into DiaThor in the correct format
diat_lobo | Calculates the Lobo Index (LOBO)
diat_morpho | Calculate morphological parameters for diatoms
diat_pbidw | Calculates the PBIDW Index (PBIDW)
diat_sampleData | Sample Data
diat_size | Calculate size classes for diatoms
diat_sla | Calculates the Sladecek Index (SLA)
diat_spear | Calculates the SPEAR(herbicides) Index (SPEAR)
diat_taxaList | Creates a single list with taxa names from all indices within DiaThor
diat_tdi | Calculates the Trophic (TDI) index
diat_vandam | Calculates ecological information for diatoms based on the Van Dam classification
disp | DISP
epid | EPID
idap | IDAP
idch | ID-CH
idp | IDP
ilm | ILM
ips | IPS
lobo | LOBO
pbidw | PBIDW
sla | SLA
spear | SPEAR(h)
taxaList | taxaList
tdi | TDI